Wissenschaftliche Publikationen

Gan, X.; Stegle, O.; Behr, J.; Steffen, J.; Drewe, P.; Hildebrand, K.; Lyngsoe , R.; Schultheiss, S.; Osborne, E.; Sreedharan, V. et al.; Kahles, A.; Bohnert, R.; Jean, G.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, F.; Toomajian, C.; Kover , P.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477 (7365), S. 419 - 423 (2011)

Schultheiss, S.; Münch, M.-C.; Andreeva, G.; Rätsch, G.: Persistence and availability of Web services in computational biology. PLoS One 6 (9), e24914 (2011)

Greenwood, A.; Jones, F.; Chan, Y.; Brady, S.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R.; Kingsley, D.; Peichel, C.: The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks. Heredity 107 (2), S. 155 - 166 (2011)

Rösel, T.; Hung, L.-H.; Medenbach, J.; Donde, K.; Starke, S.; Benes, V.; Rätsch, G.; Bindereif, A.: RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. EMBO Journal 30 (10), S. 1965 - 1976 (2011)

Antonin, W.; Ungricht, R.; Kutay, U.: Traversing the NPC along the pore membrane: targeting of membrane proteins to the INM. The Nucleus 2 (2), S. 87 - 91 (2011)

Jean, G.; Nikolski, M.: SyDiG: uncovering Synteny in Distant Genomes. International Journal of Bioinformatics Research and Applications 7 (1), S. 43 - 62 (2011)

Eichner, J.; Zeller, G.; Laubinger, S.; Rätsch, G.: Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics 12, 55 (2011)

Spencer, W.; Zeller, G.; Watson, J.; Henz, S.; Watkins, K.; McWhirter, R.; Petersen, S.; Sreedharan, V.; Widmer, C.; Jo, J. et al.; Reinke, V.; Petrella, L.; Strohme, S.; Von Stetina, S.; Katz, M.; Shaham, S.; Rätsch, G.; Miller, D.: A spatial and temporal map of C. elegans gene expression. Genome Research 21 (2), S. 325 - 341 (2011)

Hallem, E.; Spencer, W.; McWhirter, R.; Zeller, G.; Henz, S.; Rätsch, G.; Miller, D.; Horvitz, H.; Sternberg, P.; Ringstad, N.: Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America 108 (1), S. 254 - 259 (2011)

Goldenberg, A.; Hertz, T.; Leslie, C.; Qi, Y.; Rätsch, G.; Vert, J.-P. (Hg.): NIPS 2011 Workshop Machine Learning in Computational Biology. NIPS 2011 Workshop Machine Learning in Computational Biology, Melia Sierra Nevada, Spain, 17. Dezember 2011. (2011)

Hauf, S.; Heinrich, S.; Geissen, E.-M.; Kamenz, J.; Trautmann, S.; Hustedt, N.; Knop, M.; Radde, N.: A quantitative approach to exploring spindle assembly checkpoint signaling. In 50th Annual Meeting of the American Society for Cell Biology (ASCB 2011), 171, S. 95. 50th Annual Meeting of the American Society for Cell Biology (ASCB 2011), Denver, CO, USA, 03. Dezember 2011 - 07. Dezember 2011. (2011)

Schultheiss, S.; Jean, G.; Behr, J.; Bohnert, R.; Drewe, P.; Görnitz, N.; Kahles, A.; Mudrakarta, P.; Sreedharan, V.; Zeller, G. et al.; Rätsch, G.: Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. In BMC Bioinformatics, 12 (Supplement 11), A7. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Wien, Austria, 15. Juli 2011. BioMed Central (2011)

Gan, X.; Behr, J.; Steffen, J.; Hildebrand, K.; Allchin, L.; Goodstadt, L.; Stegle, O.; Drewe, P.; Lyngsoe, R.; Sreedharan, V. et al.; Osborne, E.; Toomajian, C.; Kover, P.; Rätsch, G.; Clark, R.; Mott, R.: Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines. In 22nd International Conference on Arabidopsis Research (ICAR 2011), 22, S. 78. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA, 22. Juni 2011 - 25. Juni 2011. (2011)

Behr, J.; Bohnert, R.; Kahles, A.; Rätsch, G.: Simultaneous RNA-seq-based Transcript Inference and Quantification Using Mixed Integer Programming. NIPS 2011 Workshop Machine Learning in Computational Biology , Sierra Nevada, Spain (2011)

Heinrich, S.; Geissen, E.-M.; Kamenz, J.; Trautmann, S.; Knop, M.; Radde, N.; Hauf, S.: Quantitative analysis of the spindle assembly checkpoint. 50th Annual Meeting of the American Society for Cell Biology (ASCB 2011), Denver, CO, USA (2011)

Kamenz, J.; Mihaljev, T.; Legewie, S.; Hauf, S.: Molecular analysis and mathematical modeling of the ‘switch’-like behavior of the metaphase-to-anaphase transition. 50th Annual Meeting of the American Society for Cell Biology (ASCB 2011), Denver, CO, USA (2011)

Sachdev, R.; Antonin, W.: The C terminal domain of Nup93 is essential for assembly of the structural backbone of the nuclear pore complexes. 50th Annual Meeting of the American Society for Cell Biology (ASCB 2011), Denver, CO, USA (2011)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria (2011)

Jean, G.; Raetsch, G.; Kahles, A.; Sonnenburg, S.; Schneeberger, K.; Hagmann, J.; De Bona, F.; Weigel, D.: Fast and Accurate RNA-Seq alignments with PALMapper. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Drewe, P.; Stegle, O.; Behr, J.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)