Scientific Publications

Hooper, D.; McDiarmid, C.; Powers, M.; Justyn, N.; Kučka, M.; Hart, N.; Hill, G.; Andolfatto, P.; Chan, Y.; Griffith, S.: Spread of yellow-bill-color alleles favored by selection in the long-tailed finch hybrid system. Current Biology 34 (23), pp. 5444 - 5456 (2024)

Kucka, M.; Chan, Y.: Preparation of Linked-Read Sequencing Libraries using Haplotagging beads. Springer Protocols (2024)

Seah, B.; Singh, A.; Vetter, D.; Emmerich, C.; Peters, M.; Soltys, V.; Huettel, B.; Swart, E.: Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus. Proceedings of the National Academy of Sciences of the United States of America 121 (39), e2400503121 (2024)

Li, X.; Srinivasan, V.; Laiker, I.; Misunou, N.; Frankel, N.; Pallares, L.; Crocker, J.: TF-High-Evolutionary: in vivo mutagenesis of gene regulatory networks for the study of the genetics and evolution of the Drosophila regulatory genome. Molecular Biology and Evolution 41 (8), msae167 (2024)

Melo, D.; Pallares, L.; Ayroles, J.: Reassessing the modularity of gene co-expression networks using the Stochastic Block Model. PLOS Computational Biology 20 (7), e1012300 (2024)

Venu, V.; Harjunmaa, E.; Dreau, A.; Brady, S.; Absher, D.; Kingsley, D.; Jones, F.: Fine-scale contemporary recombination variation and its fitness consequences in adaptively diverging stickleback fish. Nature Ecology & Evolution 8 (7), pp. 1337 - 1352 (2024)

Abraham, J.; Lin, B.; Miller, A.; Henry, L.; Demmel, M.; Warungu, R.; Mwangi, M.; Lobura, P.; Pallares, L.; Ayroles, J. et al.; Pringle, R.; Rubenstein, D.: Determinants of microbiome composition: Insights from free-ranging hybrid zebras (Equus quagga × grevyi). Molecular Ecology 33 (11), e17370 (2024)

Dereli, I.; Telychko, V.; Papanikos, F.; Raveendran, K.; Xu, J.; Boekhout, M.; Stanzione, M.; Neuditschko, B.; Imjeti, N.; Selezneva, E. et al.; Tuncay, H.; Demir, S.; Giannattasio, T.; Gentzel, M.; Bondarieva, A.; Stevense, M.; Barchi, M.; Schnittger, A.; Weir, J.; Herzog, F.; Keeney, S.; Tóth, A.: Seeding the meiotic DNA break machinery and initiating recombination on chromosome axes. Nature Communications 15 (1), 2941 (2024)

Pomreinke, A.; Müller, P.: Zebrafish nampt-a mutants are viable despite perturbed primitive hematopoiesis. Hereditas 161 (1), 14 (2024)

Dean, L.; Whiting, J.; Jones, F.; Maccoll, A.: Reproductive isolation in a three-way contact zone. Molecular Ecology 33 (5), e17275 (2024)

Orteu, A.; Kucka, M.; Gordon, I.; Ng'iru, I.; van der Heijden, E.; Talavera, G.; Warren, I.; Collins, S.; Ffrench-Constant, R.; Martins, D. et al.; Chan, Y.; Jiggins, C.; Martin, S.: Transposable element insertions are associated with Batesian mimicry in the pantropical butterfly Hypolimnas misippus. Molecular Biology and Evolution 41 (3), msae041 (2024)

Chen, L.; Weir, J.: The molecular machinery of meiotic recombination. Biochemical Society Transactions 52 (1), pp. 379 - 393 (2024)

Knabl, P.; Schauer, A.; Pomreinke, A.; Zimmermann, B.; Rogers, K.; Čapek, D.; Müller, P.; Genikhovich, G.: Analysis of SMAD1/5 target genes in a sea anemone reveals ZSWIM4-6 as a novel BMP signaling modulator. eLife 13, e80803 (2024)

Laine, J.; Mak, S.; Martins, N.; Chen, X.; Gilbert, M.; Jones, F.; Winther Pedersen, M.; Romundset, A.; Foote, A.: Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation. Current Biology 34 (5), pp. 1142 - 1147 (2024)

Toulany, N.; Morales-Navarrete, H.; Čapek, D.; Grathwohl, J.; Ünalan, M.; Müller, P.: Uncovering developmental time and tempo using deep learning. Nature Methods 20 (12), pp. 2000 - 2010 (2023)

Weir, J.: Molekulare Mechanismen der meiotischen Rekombination. Biospektrum 29 (7), p. 816 (2023)

Tautz, D.; Reeves, G.; Pallares, L.: The New (Old) Genetics: Version 2.0. Nova Acta Leopoldina 2020.1 (2023)

Maksymenko, K.; Maurer, A.; Aghaallaei, N.; Barry, C.; Borbarán-Bravo, N.; Ullrich, T.; Dijkstra, T.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A. et al.; Skokowa, J.; ElGamacy, M.: The design of functional proteins using tensorized energy calculations. Cell Reports Methods 3 (8), 100560 (2023)

Podobnik, M.; Singh, A.; Fu, Z.; Dooley, C.; Frohnhöfer, H.; Firlej, M.; Stednitz, S.; Elhabashy, H.; Weyand, S.; Weir, J. et al.; Lu, J.; Nüsslein-Volhard, C.; Irion, U.: kcnj13 regulates pigment cell shapes in zebrafish and has diverged by cis-regulatory evolution between Danio species. Development 150 (16), dev.201627 (2023)

Wolf, S.; Melo, D.; Garske, K.; Pallares, L.; Lea, A.; Ayroles, J.: Characterizing the landscape of gene expression variance in humans. PLoS Genetics 19 (7), e1010833 (2023)