Scientific Publications

Ben-Hur, A.; Ong, C.; Sonnenburg, S.; Schölkopf, B.; Rätsch, G.: Support Vector Machines and Kernels for Computational Biology. PLoS Computational Biology 4 (10), e1000173 (2008)

De Bona, F.; Ossowski, S.; Schneeberger, K.; Rätsch, G.: Optimal spliced alignments of short sequence reads. Bioinformatics 24 (16), pp. i174 - i180 (2008)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Widmer, C.; Widmer, C.; Naouar, N.; Vuylsteke, M.; Schölkopf, B.; Rätsch, G. et al.; Weigel, D.: At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana. Genome Biology 9 (7), R112 (2008)

Antonin, W.; Ellenberg, J.; Dultz, E.: Nuclear pore complex assembly through the cell cycle: regulation and membrane organization. FEBS Letters 582 (14), pp. 2004 - 2016 (2008)

Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J.; Rätsch, G.; Weigel, D.: Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 105 (25), pp. 8795 - 8800 (2008)

Zeller, G.; Clark, R.; Schneeberger, K.; Bohlen, A.; Weigel, D.; Rätsch, G.: Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Research 18 (6), pp. 918 - 929 (2008)

Kamena, F.; Diefenbacher, M.; Kilchert, C.; Schwarz, H.; Spang, A.: Ypt1p is essential for retrograde Golgi-ER transport and for Golgi maintenance in S. cerevisiae. Journal of Cell Science 121 (8), pp. 1293 - 1302 (2008)

Koch, I.; Schwarz, H.; Beuchle, D.; Goellner, B.; Langegger, M.; Aberle, H.: Drosophila ankyrin 2 is required for synaptic stability. Neuron 58 (2), pp. 210 - 222 (2008)

Andersen, S.; Buechel, S.; Zhao, Z.; Ljung, K.; Novák, O.; Busch, W.; Schuster, C.; Lohmann, J.: Requirement of B2-type cyclin-dependent kinases for meristem integrity in Arabidopsis thaliana. Plant Cell 20 (1), pp. 88 - 100 (2008)

Hirsch, H.; Ghiradella, H.; Barth, M.: Environmental Influences on Behavioral Development in Insects. In: Encyclopedia of Entomology, Vol. 1, 2. ed. Ed., pp. 1347 - 1353 (Ed. Capinera, J.). Springer, Dordrecht, The Netherlands (2008)

Ong, C.; Zien, A.: An Automated Combination of Kernels for Predicting Protein Subcellular Localization. In: Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, pp. 186 - 197 (Eds. Krandall, K.; Lagergren, J.). 8th Workshop on Algorithms in Bioinformatics (WABI 2008), Karlsruhe, Germany, September 15, 2008 - September 19, 2008. Springer, Berlin, Germany (2008)

Warmuth, M.; Glocer, A.; Rätsch, G.: Boosting Algorithms for Maximizing the Soft Margin. In: Advances in Neural Information Processing Systems 20: 21st Annual Conference on Neural Information Processing Systems 2007, pp. 1264 - 1271 (Eds. Platt, C.; Koller, D.; Singer, Y.; Roweis, S.). Twenty-First Annual Conference on Neural Information Processing Systems (NIPS 2007), Vancouver, BC, Canada, December 03, 2007 - December 06, 2007. Curran, Red Hook, NY, USA (2008)

Sonnenburg, S.; Zien, A.; Philips, P.; Rätsch, G.: POIMs: positional oligomer importance matrices: understanding support vector machine-based signal detectors. 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. Bioinformatics 24 (13), pp. i6 - i14 (2008)

Jones, F.; Brown, C.; Braithwaite, V.: Lack of Assortative Mating between Incipient Species of Stickleback from a Hybrid Zone. Fifth International Conference on Stickleback Behavior and Evolution, Anchorage, AL, USA, July 30, 2006 - August 04, 2006. Behaviour 145 (4-5), pp. 463 - 484 (2008)

Zeller, G.; Henz, S.; Laubinger, S.; Weigel, D.; Rätsch, G.: Transcript normalization and segmentation of tiling array data. In: Pacific Symposium on Biocomputing (PSB 2008), pp. 527 - 538. Pacific Symposium on Biocomputing (PSB 2008), Fairmont Orchid, HI, USA, January 04, 2008 - January 08, 2008. (2008)

Bohnert, R.; Zeller, G.; Clark, R.; Childs, K.; Ulat, V.; Stokowski, R.; Ballinger , D.; Frazer, K.; Cox, D.; Bruskiewich, R. et al.; Buell, C.; Leach, J.; Leung, H.; McNally, K.; Weigel, D.; Rätsch, G.: Revealing sequence variation patterns in rice with machine learning methods. In BMC Bioinformatics, 9 (Supplement 10), O8. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. BioMed Central (2008)

Rätsch, G.; Clark, L.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Cheng, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg, M.; Ecker, J.; Weigel, D.; Schneeberger, K.; Bohlen, A.: Discovering Common Sequence Variation in Arabidopsis thaliana. In 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008). 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Rätsch, G.: Boosting, Margins and Beyond. Annual Belgian-Dutch Machine Learning Conference (Benelearn 2008), Spa, Belgium (2008)

Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J.; Rätsch, G.; Weigel, D.: Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. 19th International Conference on Arabidopsis Research (ICAR 2008), Montreal, Canada (2008)