Scientific Publications

Brown, C.; Jones, F.; Pemberton, J.; Braithwaite, V.: Reproductive isolation in a threespine stickleback hybrid zone. Journal of Evolutionary Biology 19 (5), pp. 1531 - 1544 (2006)

Selmer, M.; Dunham, C.; Murphy, F.; Weixlbaumer, A.; Petry, S.; Kelley, A.; Weir, J.; Ramakrishnan, V.: Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313 (5795), pp. 1935 - 1942 (2006)

Sonnenburg, S.; Rätsch, G.; Schäfer, C.; Schölkopf, B.: Large Scale Multiple Kernel Learning. The Journal of Machine Learning Research 7, pp. 1531 - 1565 (2006)

Trautwein, M.; Schindler, C.; Gauss, R.; Dengjel, J.; Hartmann, E.; Spang, A.: Arf1p, Chs5p and the ChAPs are required for export of specialized cargo from the Golgi. EMBO Journal 25 (5), pp. 943 - 954 (2006)

Chechik, G.; Leslie, C.; Rätsch, G.; Tsuda, K. (Eds.): NIPS Workshop on New Problems and Methods in Computational Biology (BMC Bioinformatics, 7). NIPS Workshop on New Problems and Methods in Computational Biology 2004, Whistler, Canada, December 08, 2004. (2006)

Rätsch, G.; Hepp, B.; Schulze, U.; Ong, C.: PALMA: Perfect Alignments using Large Margin Algorithms. In: German Conference on Bioinformatics 2006 (GCB 2006), pp. 104 - 113 (Eds. Huson, D.; Kohlbacher, O.; Lupas, A.; Nieselt, K.; Zell, A.). German Conference on Bioinformatics (GCB 2006), Tübingen, Germany, September 19, 2006 - September 22, 2006. Gesellschaft für Informatik, Bonn, Germany (2006)

Shin, H.; Hill, N.; Rätsch, G.; Rätsch, G.: Graph Based Semi-Supervised Learning with Sharper Edges. In: Machine Learning: ECML 2006: 17th European Conference on Machine Learning Berlin, Germany, September 18-22, 2006, pp. 401 - 412 (Eds. Fürnkranz, J.; Scheffer, T.; Spiliopoulou, M.). 17th European Conference on Machine Learning (ECML 2006), Berlin, Germany, September 18, 2006 - September 22, 2006. Springer, Berlin, Germany (2006)

Sonnenburg, S.; Zien, A.; Rätsch, G.: ARTS: Accurate Recognition of Transcription Starts in Human. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil, August 06, 2006 - August 10, 2006. Bioinformatics 22 (14), H-56, pp. e472 - e480 (2006)

Rätsch, G.; Sonnenburg, S.; Schäfer, C.: Learning interpretable SVMs for biological sequence classification. NIPS Workshop on New Problems and Methods in Computational Biology, Whistler, Canada, December 08, 2004. BMC Bioinformatics 7 (Supplement 1), S9, (2006)

Rätsch, G.: The Solution of Semi-Infinite Linear Programs Using Boosting-Like Methods. In: Discovery Science: 9th International Conference, DS 2006, Barcelona, Spain, October 7-10, 2006, p. 15 (Eds. Todorovsky, L.; Lavrač , N.; Jantke, K.). International Conference on Discovery Science (DS 2006), Barcelona, Spain, October 06, 2006 - October 10, 2006. Springer, Berlin, Germany (2006)

Sonnenburg, S.; De Bona, F.; Rätsch, G.: SHOGUN: A Large Scale Machine Learning Toolbox. In The R User Conference 2006: 2nd International R User Conference, p. 154. 2nd International R User Conference (useR! 2006), Wien, Austria, June 15, 2006 - June 17, 2006. (2006)

Rätsch, G.; Ong, C.: Kernel Methods for Predictive Sequence Analysis. German Conference on Bioinformatics (GCB 2006), Tübingen, Germany (2006)

Rätsch, G.; Sonnenburg, S.; Srinivasan, J.; Müller, K.-R.; Sommer , R.; Schölkopf, B.: Splice Form Prediction using Machine Learning. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil (2006)

Zeller, G.; Schweikert, G.; Clark, R.; Ossowski, S.; Warthmann, N.; Shinn, P.; Frazer, K.; Ecker, J.; Huson, D.; Weigel, D. et al.; Schölkopf, B.; Rätsch, G.: Machine Learning Algorithms for Polymorphism Detection. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil (2006)

Clark, R.; Ossowski, S.; Schweikert, G.; Zeller, G.; Shinn , P.; Rätsch, G.; Warthmann, N.; Fu, G.; Hinds, D.; Cheng, H. et al.; Frazer, K.; Toomajian, C.; Hu, T.; Huson, D.; Schölkopf, B.; Nordborg, M.; Ecker, J.; Weigel, D.: An Inventory of Common Sequence Polymorphisms for Arabidopsis. 17th International Conference on Arabidopsis Research (ICAR 2006), Madison, WI, USA (2006)

Zien, A.; Rätsch, G.; Ong, C.: Towards the Inference of Graphs on Ordered Vertexes (Technical Report of the Max Planck Institute for Biological Cybernetics, 150). Max Planck Institute for Biological Cybernetics, Tübingen, Germany (2006), 9 pp.

Zien, A.; Ong, C.: An Automated Combination of Sequence Motif Kernels for Predicting Protein Subcellular Localization (Technical Report of the Max Planck Institute for Biological Cybernetics, 146). Max Planck Institute for Biological Cybernetics, Tübingen, Germany (2006), 18 pp.