Scientific Publications

Toulany, N.; Morales-Navarrete, H.; Čapek, D.; Grathwohl, J.; Ünalan, M.; Müller, P.: Uncovering developmental time and tempo using deep learning. Nature Methods 20 (12), pp. 2000 - 2010 (2023)

Weir, J.: Molekulare Mechanismen der meiotischen Rekombination. Biospektrum 29 (7), p. 816 (2023)

Tautz, D.; Reeves, G.; Pallares, L.: The New (Old) Genetics: Version 2.0. Nova Acta Leopoldina 2020.1 (2023)

Maksymenko, K.; Maurer, A.; Aghaallaei, N.; Barry, C.; Borbarán-Bravo, N.; Ullrich, T.; Dijkstra, T.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A. et al.; Skokowa, J.; ElGamacy, M.: The design of functional proteins using tensorized energy calculations. Cell Reports Methods 3 (8), 100560 (2023)

Podobnik, M.; Singh, A.; Fu, Z.; Dooley, C.; Frohnhöfer, H.; Firlej, M.; Stednitz, S.; Elhabashy, H.; Weyand, S.; Weir, J. et al.; Lu, J.; Nüsslein-Volhard, C.; Irion, U.: kcnj13 regulates pigment cell shapes in zebrafish and has diverged by cis-regulatory evolution between Danio species. Development 150 (16), dev.201627 (2023)

Wolf, S.; Melo, D.; Garske, K.; Pallares, L.; Lea, A.; Ayroles, J.: Characterizing the landscape of gene expression variance in humans. PLoS Genetics 19 (7), e1010833 (2023)

Čapek, D.; Safroshkin, M.; Morales-Navarrete, H.; Toulany, N.; Arutyunov, G.; Kurzbach, A.; Bihler, J.; Hagauer, J.; Kick, S.; Jones, F. et al.; Jordan, B.; Müller, P.: EmbryoNet: using deep learning to link embryonic phenotypes to signaling pathways. Nature Methods 20 (6), pp. 815 - 823 (2023)

Altmannova, V.; Firlej, M.; Mueller, F.; Janning, P.; Rauleder, R.; Rousova, D.; Schaeffler, A.; Bange, T.; Weir, J.: Biochemical characterisation of Mer3 helicase interactions and the protection of meiotic recombination intermediates. Nucleic Acids Research (London) 51 (9), gkad175, pp. 4363 - 4384 (2023)

Kersten, S.; Chang, J.; Huber, C.; Voichek, Y.; Lanz, C.; Hagmaier, T.; Lang, P.; Lutz, U.; Hirschberg, I.; Lerchl, J. et al.; Porri, A.; Van de Peer, Y.; Schmid, K.; Weigel, D.; Rabanal, F.: Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass. Proceedings of the National Academy of Sciences of the United States of America 120 (16), e2206808120 (2023)

Shipilina, D.; Stankowski, S.; Pal, A.; Chan, Y.; Barton, N.: On the origin and structure of haplotype blocks. Molecular Ecology 32 (6), pp. 1441 - 1457 (2023)

Clasen, S.; Bell, M.; Borbón, A.; Lee, D.-H.; Henseler, Z.; de la Cuesta-Zuluaga, J.; Parys, K.; Zou, J.; Wang, Y.; Altmannova, V. et al.; Youngblut, N.; Weir, J.; Gewirtz, A.; Belkhadir, Y.; Ley, R.: Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science Immunology 8 (79), eabq7001 (2023)

Jones, L.; Lou, R.; Murray, C.; Robert, D.; Bourne, C.; Bouchard, C.; Kučka, M.; Chan, Y.; Carlon, D.; Wiley, D. et al.; Therkildsen, N.; Baumann, H.: Two distinct population clusters of northern sand lance (Ammodytes dubius) on the northwest Atlantic shelf revealed by whole genome sequencing. ICES Journal of Marine Science 80 (1), fsac217, pp. 122 - 132 (2023)

Pallares, L.; Lea, A.; Han, C.; Filippova, E.; Andolfatto, P.; Ayroles, J.: Dietary stress remodels the genetic architecture of lifespan variation in outbred Drosophila. Nature Genetics 55 (1), pp. 123 - 129 (2023)

Firlej, M.; Weir, J.: Unwinding during stressful times: Mechanisms of helicases in meiotic recombination. In: Current Topics in Developmental Biology, Vol. 151. Academic Press, New York (2023)

Evseeva, D.; Pecrix, Y.; Poussier, S.; Wicker, E.; Kucka, M.; Chan, F.; Gopalan-Nair, R.; McCann, H.: Diversification of two-partner secretion systems in the bacterial plant pathogen Ralstonia solanacearum. In 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), FT 19, p. 14. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany, October 11, 2023 - October 13, 2023. (2023)

Weir, J.: Insights into Meiosis: Elucidating DNA Repair Modulation via Mass Spectrometry. In GBM Compact: Focus on Proteomics. GBM Compact: Focus on Proteomics, Frankfurt a.M., Germany, September 05, 2023 - September 06, 2023. (2023)

Artiushin, I.; Blumer, L.; Burskaia, V.; Saha, J.; Kučka, M.; Chan, Y.; Durbin, R.; Svardal, H.: Chromosome-scale inversions in the Malawi cichlid radiation: widespread and long-lived. In SMBE 2023, p. 523. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Cho, L.; Le Moan, A.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, Y.: Role of chromosomal inversions in adaption and speciation in the flat periwinkle Littorina fabalis. In SMBE 2023, pp. 519 - 520. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Forsberg, S.; Melo, D.; Wolf, S.; Grenier, J.; Tang, M.; Henry, L.; Pallares, L.; Clark, A.; Ayroles, J.: Longitudinal sequencing reveals polygenic and epistatic nature of genomic response to selection. In SMBE 2023, pp. 376 - 377. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Laine, J.; Mak, S.; Martins, N.; Chen, X.; Gilbert, M.; Jones, F.; Winther Pedersen, M.; Romundset, A.; Foote, A.: Ancient stickleback environmental genomes track adaptation across ecological transitions. In SMBE 2023, pp. 57 - 58. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)