Wissenschaftliche Publikationen

Zhang, Y.; Stöppelkamp, I.; Fernandez-Pernas, P.; Allram, M.; Charman, M.; Magalhães, A. P.; Piedavent-Salomon, M.; Sommer, G.; Sung, Y.-C.; Meyer, K. et al.; Grams, N.; Halko, E.; Dongre, S.; Meierhofer, D.; Malszycki, M.; Ilik, I. A.; Aktas, T.; Kraushar, M. L.; Vastenhouw, N.; Weitzman, M. D.; Grebien, F.; Niskanen, H.; Hnisz, D.: Probing condensate microenvironments with a micropeptide killswitch. Nature (2025)

Key, J.; Almaguer-Mederos, L.-E.; Reddy Kandi, A.; Sen, N.-E.; Gispert, S.; Köpf, G.; Meierhofer, D.; Auburger, G.: ATXN2L primarily interacts with NUFIP2, the absence of ATXN2L results in NUFIP2 depletion, and the ATXN2-polyQ expansion triggers NUFIP2 accumulation. Neurobiology of Disease 209, Article 106903 (2025)

Alberge, J.-B.; Dutta, A.; Poletti, A.; Coorens, T. H. H.; Lightbody, E.; Toenges, R.; Loinaz, X.; Wallin, S.; Dunford, A.; Priebe, O. et al.; Dagan, J.; Boehner, C. J.; Horowitz, E.; Su, N. K.; Barr, H.; Hevenor, L.; Towle, K.; Beesam, R.; Beckwith, J. B.; Perry, .; Cordas dos Santos, D. M.; Bertamini, L.; Greipp , . T.; Kübler, K.; Arndt, P. F.; Terragna, C.; Zamagni, E.; Boyle, E.; Yong, K.; Morgan, G.; Walker, B. A.; Dimopoulos, M.; Kastritis, E.; Hess, J.; Sklavenitis-Pistofidis, R.; Stewart, C.; Getz, G.; Ghobrial, I. M.: Genomic landscape of multiple myeloma and its precursor conditions. Nature Genetics (2025)

Traba, S. A.; Bacigalupo, L.; Fradin, D.; Talon, I.; Heidenreich, A. C.; Muraro, D.; Garcia-Bernardo, J.; Gribben , C.; Lugtu, F.; Burgos, J. I. et al.; Romero, A.; Chhatriwala, M.; Pecci, A.; Vallier, L.; Rodríguez-Seguí, S. A.: Endogenous glucocorticoid receptor activation modulates early-stage cell differentiation in pancreatic progenitors of mice and humans. Development, Article dev.204361 (2025)

Hurtado, A.; Mota-Gómez, I.; Lao, M.; Real, F. M.; Jedamzick, J.; Burgos, M.; Lupiáñez, D. G.; Jiménez, R.; Barrionuevo, F. J.: Complete male-to-female sex reversal in XY mice lacking the miR-17~92 cluster. Nature Communications 15 (1), Article 3809 (2025)

Chteinberg, E.; Kolarova, J.; Vogt, J.; Macamo, A.; Bormann, F.; Kretzmer, H.; Speel, E. J.; van den Oord, J.; Schneider, C.; Stilgenbauer, S. et al.; Becker, J. C.; Winnepenninckx, V.; Biessen, E.; Zenke, M.; Kurz, A. K.; Siebert, R.; Zur Hausen , A.: The significance of PAX5 in Merkel cell carcinoma. The Journal of Pathology: an Official Journal of the Pathological Society of Great Britain and Ireland 266 (1), S. 81 - 94 (2025)

Ortuño-Costela, M. C.; Pinzani, M.; Vallier, L.: Cell therapy for liver disorders: past, present and future. Nature Reviews Gastroenterology & Hepatology 22 (5), S. 329 - 342 (2025)

Damiani, F.; Giuliano, M. G.; Cornuti, S.; Putignano, E.; Tognozzi, A.; Suckow, V.; Kalscheuer, V. M.; Pizzorusso, T.; Tognini, P.: Multi-site investigation of gut microbiota in CDKL5 deficiency disorder mouse models: Targeting dysbiosis to improve neurological outcomes. Cell Reports 44 (4), Article 115546 (2025)

Dordevic, N.; Dierks, C.; Hantikainen, E.; Farztdinov, V.; Amari, F.; Hernandes, V. V.; De Grandi, A.; Domingues, F. S.; Shomroni, O.; Textoris-Taube, K. et al.; Bahr, V.; Schmid, H.; Demuth, I.; Kurth, F.; Mülleder, M.; Pramstaller , P. P.; Rainer, J.; Ralser, M.: Extensive modulation of the circulating blood proteome by hormonal contraceptive use across two population studies. Communications Medicine 5 (1), Article 131 (2025)

Schwab, R. M.; Gottlieb, S. G.; Reinert, K.: TetRex: a novel algorithm for index-accelerated search of highly conserved motifs. NAR: genomics and bioinformatics 7 (2), Article lqaf039 (2025)

Villaronga-Luque, A.; Savill, R. G.; López-Anguita, N.; Bolondi, A.; Garai, S.; Gassaloglu, S. I.; Rouatbi, R.; Schmeisser, K.; Poddar, A.; Bauer, L. et al.; Alves, T.; Traikov, S.; Rodenfels, J.; Chavakis, T.; Bulut-Karslioglu, A.; Veenvliet, J. V.: Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model. Cell Stem Cell 32 (5), S. 759 - 777 (2025)

Liu, H.; Yin, G.; Leonardi, B. F.; Lan, T.; Ahmed, Y. A.; Berger, H.; Kohlhepp, M. S.; Amiridze, N.; Martagón Calderón, N.; Frau, C. et al.; Vallier, L.; Rezvani, M.; Tacke, F.; Guillot, A.: Reactive cholangiocyte-derived ORM2 drives a pathogenic modulation of the injured biliary niche through macrophage reprogramming. Gut, Article gutjnl-2024-334425 (2025)

Altendorfer, E.; Mundlos, S.; Mayer, A.: A transcription coupling model for how enhancers communicate with their target genes. Nature Structural & Molecular Biology 32 (4), S. 598 - 606 (2025)

Glaser , S.; Fischer, A.; Martínez-Manjón, J. E.; López, C.; Kretzmer, H.; Burkhardt, B.; Hübschmann, D.; Hummel, M.; Klapper, W.; Kolarova, J. et al.; Kreuz, M.; Ott, G. e. a.: Subgrouping germinal center-derived B-cell lymphomas based on machine learning-deduced DNA methylation modules. Leukemia 39 (4), S. 967 - 971 (2025)

Berghöfer, J.; Khaveh, N.; Mundlos, S.; Metzger, J.: Multi-tool copy number detection highlights common body size-associated variants in miniature pig breeds from different geographical regions. BMC Genomics 26 (1), Article 285 (2025)

Messingschlager, M.; Mackowiak, S. D.; Voelker, M. T.; Bieg, M.; Loske, J.; Chua, R. L.; Liebig, J.; Lukassen, S.; Thürmann, L.; Seegebarth, A. et al.; Twardziok, S.; Doncevic, D.; Herrmann, C.; Lorenz, S.; Klages, S.; Steinbeis, F.; Witzenrath, M.; Kurth, F.; Conrad, C.; Sander, L. E.; Ishaque, N.; Eils, R.; Lehmann , I.; Laudi, S.; Trump, S.: DNA methylation changes during acute COVID-19 are associated with long-term transcriptional dysregulation in patients' airway epithelial cells. Embo Molecular Medicine (2025)

Gottlieb, S. G.; Reinert, K.: SeArcH schemes for Approximate stRing mAtching. NAR: genomics and bioinformatics 7 (1), Article lqaf025 (2025)

Nowatzky, Y.; Russo, F. F.; Lisec, J.; Kister, A.; Reinert, K.; Muth, T.; Benner, P.: FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events. Nature Communications 16 (1), Article 2298 (2025)

Abdullaev, E. T.; Haridoss, D. A.; Arndt, P. F.: Reconstruction of Segmental Duplication Rates and Associated Genomic Features by Network Analysis. Genome Biology and Evolution 17 (3), Article evaf011 (2025)

Wang, M.; Di Pietro-Torres, A.; Feregrino, C.; Luxey, M.; Moreau, C.; Fischer, S.; Fages, A.; Ritz, D.; Tschopp, P.: Distinct gene regulatory dynamics drive skeletogenic cell fate convergence during vertebrate embryogenesis. Nature Communications 16 (1), Article 2187 (2025)