Scientific Publications

Haggerty, C.; Kretzmer, H.; Riemenschneider, C.; Sampath Kumar, A.; Mattei, A. L.; Bailly, N.; Gottfreund, J.; Giesselmann, P.; Weigert, R.; Brändl, B. et al.; Giehr, P.; Buschow, R.; Galonska, C.; von Meyenn, F.; Pappalardi, M. B.; McCabe, M. T.; Wittler, L.; Giesecke-Thiel, C.; Mielke, T.; Meierhofer, D.; Timmermann, B.; Müller, F.-J.; Walter, J.; Meissner, A.: Dnmt1 has de novo activity targeted to transposable elements. Nature Structural and Molecular Biology 2021 (2021)

Cichońska, A.; Ravikumar, B.; Allaway, R. J.; Wan, F.; Park, S.; Isayev, O.; Li, S.; Mason, M.; Lamb, A.; Tanoli, Z. et al.; Jeon, M.; Kim, S.; Popova, M.; Capuzzi, S.; Zeng, J.; Dang, K.; Koytiger, G.; Kang, J.; Wells, C. I.; Willson, T. M.; Lienhard, M.; Prasse, P.; Bachmann, I.; Ganzlin, J.; Barel, G.; Herwig, R.; Oprea, T. I.; Schlessinger, A.; Drewry, D. H.; Stolovitzky, G.; Wennerberg, K.; Guinney, J.; Aittokallio, T.: Crowdsourced mapping of unexplored target space of kinase inhibitors. Nature Communications 12, 3307 (2021)

Veenvliet, J. V.; Herrmann, B. G.: Modeling mammalian trunk development in a dish. Developmental Biology 474, pp. 5 - 15 (2021)

Jax, E.; Mueller, I.; Börno, S.; Borlinghaus, H.; Eriksson, G.; Fricke, E.; Timmermann, B.; Pendl, H.; Fiedler, W.; Klein, K. et al.; Schreiber, F.; Wikelski, M.; Magor, K. E.; Kraus, R. H. S.: Health monitoring in birds using bio‑loggers and whole blood transcriptomics. Scientific Reports 11, 10815 (2021)

Rossmann, M. P.; Hoi, K.; Chan, V.; Abraham, B. J.; Yang, S.; Mullahoo, J.; Papanastasiou, M.; Wang, Y.; Elia, I.; Perlin, J. R. et al.; Hagedorn, E. J.; Hetzel, S.; Weigert, R.; Vyas, S.; Nag, P. P.; Sullivan, L. B.; Warren, C. R.; Dorjsuren, B.; Custo Greig, E.; Adatto, I.; Cowan, C. A.; Schreiber, S. L.; Young, R. A.; Meissner, A.; Haigis, M. C.; Hekimi, S.; Carr, S. A.; Zon, L. I.: Cell-specific transcriptional control of mitochondrial metabolism by TIF1γ drives erythropoiesis. Science 372 (6543), pp. 716 - 721 (2021)

Pan, H.; Renaud, L.; Chaligne, R.; Bloehdorn, J.; Tausch, E.; Mertens, D.; Fink, A. M.; Fischer, K.; Zhang, C.; Betel, D. et al.; Gnirke, A.; Imielinski, M.; Moreaux, J.; Hallek, M.; Meissner, A.; Stilgenbauer, S.; Wu, C. J.; Elemento, O.; Landau, D. A.: Discovery of candidate DNA methylation cancer driver genes. Cancer Discovery 2021, 20-1334 (2021)

Gajos, M.; Jasnovidova, O.; van Bömmel, A.; Freier, S.; Vingron, M.; Mayer, A.: Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research (London) 49 (8), pp. 4402 - 4420 (2021)

Voisin, N.; Schnur, R. E.; Douzgou , S.; Hiatt, S. M.; Rustad, C. F.; Brown, N. J.; Earl, D. L.; Keren, B.; Levchenko, O.; Geuer, S. et al.; Verheyen, S.; Johnson , D.; Zarate, Y. A.; Hančárová, M.; Amor, D. J.; Bebin, E. M.; Blatterer, J.; Brusco, A.; Cappuccio, G.; Charrow, J.; Chatron, N.; Cooper, G. M.; Courtin, T.; Dadali, E.; Delafontaine, J.; Del Giudice, E.; Doco, M.; Douglas, G.; Eisenkölbl, A.; Funari, T.; Giannuzzi , G.; Gruber-Sedlmayr, U.; Guex, N.; Heron, D.; Holla, Ø. L.; Hurst, A. C. E.; Juusola, J.; Kronn, D.; Lavrov, A.; Lee, C.; Lorrain, S.; Merckoll, E.; Mikhaleva, A.; Norman, J.; Pradervand, S.; Prchalová, D.; Rhodes, L.; Sanders , V. R.; Sedláček, Z.; Seebacher , H. A.; Sellars, E. A.; Sirchia, F.; Takenouchi, T.; Tanaka, A. J.; Taska-Tench, H.; Tønne, E.; Tveten, K.; Vitiello, G.; Vlčková , M.; Uehara, T.; Nava, C.; Yalcin, B.; Kosaki, K.; Donnai, D.; Mundlos, S.; Brunetti-Pierri, N.; Chung, W. K.; Reymond, A.: Variants in the degron of AFF3 are associated with intellectual disability, mesomelic dysplasia, horseshoe kidney, and epileptic encephalopathy. The American Journal of Human Genetics 108 (5), pp. 857 - 873 (2021)

Hübschmann, D.; Kleinheinz, K.; Wagener, R.; Bernhart, S. H.; López, C.; Toprak, U. H.; Sungalee, S.; Ishaque, N.; Kretzmer, H.; Kreuz, M. et al.; Waszak, S. M.; Paramasivam, N.; Ammerpohl, O.; Aukema, S. M.; Beekman, R.; Bergmann, A. K.; Bieg, M.; Binder, H.; Borkhardt, A.; Borst, C.; Brors, B.; Bruns, P.; de Santa Pau, E. C.; Claviez, A.; Doose, G.; Haake, A.; Karsch, D.; Haas, S.; Hansmann, M.-L.; Hoell, J. I.; Hovestadt, V.; Huang, B.; Hummel, M.; Jäger-Schmidt, C.; Kerssemakers, J. N. A.; Korbel, J. O.; Kube, D.; Lawerenz, C.; Lenze, D.; Martens, J. H. A.; Ott, G.; Radlwimmer, B.; Reisinger, E.; Richter, J.; Rico, D.; Rosenstiel, P.; Rosenwald, A.; Schillhabel, M.; Stilgenbauer, S.; Stadler, P. F.; Martín-Subero, J. I.; Szczepanowski, M.; Warsow, G.; Weniger, M. A.; Zapatka, M.; Valencia, A.; Stunnenberg, H. G.; Lichter, P.; Möller, P.; Loeffler, M.; Eils, R.; Klapper, W.; Hoffmann, S.; Trümper, L.; ICGC MMML-Seq consortium; ICGC DE-Mining consortium; BLUEPRINT consortium; Küppers, R.; Schlesner, M.; Siebert, R.: Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas. Leukemia: the Journal of Normal and Malignant Hemopoiese ; Official Journal of the Leukemia Research Fund U.K. 2021 (2021)

Roch, T.; Giesecke-Thiel, C.; Blazquez-Navarro, A.; Wehler, P.; Thieme, C. J.; Juelke, K.; Grütz, G.; Hörstrup, J.; Witzke, O.; Dittmer, U. et al.; Stervbo, U.; Reinke, P.; Westhoff, T. H.; Babel, N.: Generation of HBsAg-reactive T- and B-cells following HBV vaccination in serological non-responders under hemodialysis treatment. European Journal of Immunology 51 (5), pp. 1278 - 1281 (2021)

Pivovarova-Ramich, O.; Loske, J.; Hornemann, S.; Markova, M.; Seebeck, N.; Rosenthal, A.; Klauschen, F.; Castro, J. P.; Buschow, R.; Grune, T. et al.; Lange, V.; Rudovich, N.; Ouwens, D. M.: Hepatic Wnt1 Inducible Signaling Pathway Protein 1 (WISP-1/CCN4) Associates with Markers of Liver Fibrosis in Severe Obesity. Cells 10, 1048 (2021)

Schreyer, S.; Berndt, N.; Eckstein, J.; Mülleder, M.; Hemmati-Sadeghi, S.; Klein, C.; Abuelnor, B.; Panzel, A.; Meierhofer, D.; Spranger, J. et al.; Steiner, B.; Brachs, S.: Dietary-challenged mice with Alzheimer-like pathology show increased energy expenditure and reduced adipocyte hypertrophy and steatosis. Aging 2021, 202978 (2021)

Knudsen, T. B.; Spielmann, M.; Megason, S. G.; Faustman, E. M.: Single-cell profiling for advancing birth defects research and prevention. Birth Defects Research 113 (7), pp. 546 - 559 (2021)

Inak, G.; Rybak-Wolf, A.; Lisowski, P.; Pentimalli, T. M.; Jüttner, R.; Glažar, P.; Uppal, K.; Bottani, E.; Brunetti, D.; Secker, C. et al.; Zink, A.; Meierhofer, D.; Henke , M.-T.; Dey, M.; Ciptasar, U.; Mlody, B.; Hahn, T.; Berruezo-Llacuna, M.; Karaiskos, N.; Di Virgilio, M.; Mayr, J. A.; Wortmann, S. B.; Priller , J.; Gotthardt, M.; Jones , D. P.; Mayatepek, E.; Stenzel, W.; Diecke, S.; Kühn, R.; Wanker , E. E.; Rajewsky, N.; Schuelke, M.; Prigione, A.: Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndrome. Nature Communications 12, 1929 (2021)

Benner, P.: Computing Leapfrog Regularization Paths with Applications to Large-Scale K-mer Logistic Regression. Journal of Computational Biology 2021, pp. 1 - 10 (2021)

Nikolay, R.; Hilal, T.; Schmidt, S.; Qin, B.; Schwefel, D.; Vieira-Vieira, C. H.; Mielke, T.; Bürger, J.: Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization. Molecular Cell 81 (6), pp. 1200 - 1215 (2021)

Annaldasula, S.; Gajos, M.; Mayer, A.: IsoTV: processing and visualizing functional features of translated transcript isoforms. Bioinformatics 2021, btab103 (2021)

Allou, L.; Balzano, S.; Magg, A.; Quinodoz, M.; Royer-Bertrand, B.; Schöpflin, R.; Chan, W.-L.; Speck-Martins, C. E.; Rocha Carvalho, D.; Farage, L. et al.; Marques Lourenço, C.; Albuquerque, R.; Rajagopal, S.; Nampoothiri, S.; Campos-Xavier, B.; Chiesa, C.; Niel-Bütschi, F.; Wittler, L.; Timmermann, B.; Spielmann, M.; Robson, M.; Ringel, A.; Heinrich, V.; Cova, G.; Andrey , G.; Prada-Medina, C. A.; Pescini-Gobert, R.; Unger, S.; Bonafé, L.; Grote, P.; Rivolta, C.; Mundlos, S.; Superti-Furga, A.: Non-coding deletions identify Maenli lncRNA as a limb-specific En1 regulator. Nature (2021)

Panconesi, R.; Mauricio , F. C.; Mueller, M.; Meierhofer, D.; Dutkowski, P.; Muiesan, P.; Schlegel, A.: Viability Assessment in Liver Transplantation—What Is the Impact of Dynamic Organ Preservation? Biomedicines 9 (2), 161 (2021)

Amaral, A.; Herrmann, B. G.: RAC1 controls progressive movement and competitiveness of mammalian spermatozoa. PLoS Genetics 17 (2), e1009308 (2021)