Scientific Publications

Sobti, M.; Mead, B.; Stewart, A.; Igreja, C.; Christie, M.: Molecular basis for GIGYF-TNRC6 complex assembly. RNA: A Publication of the RNA Society 29 (6), pp. 724 - 734 (2023)

Bazin, J.; Elvira-Matelot, E.; Blein, T.; Jauvion, V.; Bouteiller, N.; Cao, J.; Crespi, M.; Vaucheret, H.: Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting post-transcriptional transgene silencing. Plant Cell 35 (6), koad091, pp. 1917 - 1935 (2023)

Pinto, Y.; Frishman, S.; Turjeman, S.; Eshel, A.; Nuriel-Ohayon, M.; Shrossel, O.; Ziv, O.; Walters, W.; Parsonnet, J.; Ley, C. et al.; Johnson, E.; Kumar, K.; Schweitzer, R.; Khatib, S.; Magzal, F.; Muller, E.; Tamir, S.; Tenenbaum-Gavish, K.; Rautava, S.; Salminen, S.; Isolauri, E.; Yariv, O.; Peled, Y.; Poran, E.; Chen, R.; Hod, M.; Borenstein, E.; Ley, R.; Schwartz, B.; Louzoun, Y.; Hadar, E.; Koren, O.: Gestational diabetes is driven by microbiota-induced inflammation months before diagnosis. Gut 72 (5), gutjnl-2022-328406, pp. 918 - 928 (2023)

Kersten, S.; Chang, J.; Huber, C.; Voichek, Y.; Lanz, C.; Hagmaier, T.; Lang, P.; Lutz, U.; Hirschberg, I.; Lerchl, J. et al.; Porri, A.; Van de Peer, Y.; Schmid, K.; Weigel, D.; Rabanal, F.: Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass. Proceedings of the National Academy of Sciences of the United States of America 120 (16), e2206808120 (2023)

Vallebueno-Estrada, M.; Hernández-Robles, G.; González-Orozco, E.; López-Valdivia, I.; Rosales Tham, R.; Vásquez Sánchez, V.; Swarts, K.; Dillehay, T.; Vielle-Calzada, J.; Montiel, R.: Domestication and lowland adaptation of coastal preceramic maize from Paredones, Peru. eLife 12, e83149 (2023)

Ferguson, S.; Jones, A.; Murray, K.; Schwessinger, B.; Borevitz, J.: Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus. Molecular Ecology 32 (6), pp. 1271 - 1287 (2023)

Jaegle, B.; Pisupati, H.; Soto-Jiménez, L.; Burns, R.; Rabanal, F.; Nordborg, M.: Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity. Genome Biology 24 (1), 44 (2023)

Lenuzzi, M.; Witte, H.; Riebesell, M.; Rödelsperger, C.; Hong, R.; Sommer, R.: Influence of environmental temperature on mouth-form plasticity in Pristionchus pacificus acts through daf-11-dependent cGMP signaling. Journal of Experimental Zoology Part B-Molecular and Developmental Evolution 340 (2), pp. 214 - 224 (2023)

Chen, X.-R.; Poudel, L.; Hong, Z.; Johnen, P.; Katti, S.; Tripathi, A.; Nile, A.; Green, S.; Khan, D.; Schaaf, G. et al.; Bono, F.; Bankaitis, V.: Mechanisms by Which Small Molecules of Diverse Chemotypes Arrest Sec14 Lipid Transfer Activity. The Journal of Biological Chemistry 299 (2), 102861 (2023)

Zozaya, S.; Teasdale, L.; Tedeschi, L.; Higgie, M.; Hoskin, C.; Moritz, C.: Initiation of speciation across multiple dimensions in a rock-restricted, tropical lizard. Molecular Ecology 32 (3), pp. 680 - 695 (2023)

Bakker, R.; Ellers, J.; Roelofs, D.; Vooijs, R.; Dijkstra, T.; van Gestel, C.; Hoedjes, K.: Combining time-resolved transcriptomics and proteomics data for Adverse Outcome Pathway refinement in ecotoxicology. Science of the Total Environment 869, 161740 (2023)

Christie, M.; Igreja, C.: eIF4E-homologous protein (4EHP): a multifarious cap-binding protein. The FEBS Journal 290 (2), pp. 266 - 285 (2023)

Kennedy, K.; de Goffau, M.; Perez-Muñoz, M.; Arrieta, M.-C.; Bäckhed, F.; Bork, P.; Braun, T.; Bushman, F.; Dore, J.; de Vos, W. et al.; Earl, A.; Eisen, J.; Elovitz, M.; Ganal-Vonarburg, S.; Gänzle, M.; Garrett, W.; Hall, L.; Hornef, M.; Huttenhower, C.; Konnikova, L.; Lebeer, S.; Macpherson, A.; Massey, R.; McHardy, A.; Koren, O.; Lawley, T.; Ley, R.; O'Mahony, L.; O'Toole, P.; Pamer, E.; Parkhill, J.; Raes, J.; Rattei, T.; Salonen, A.; Segal, E.; Segata, N.; Shanahan, F.; Sloboda, D.; Smith, D.; Sokol, H.; Spector, T.; Surette, M.; Tannock, G.; Walker, A.; Yassour, M.; Walter, J.: Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945), pp. 639 - 649 (2023)

Pierella Karlusich, J.; Pelletier, E.; Zinger, L.; Lombard, F.; Zingone, A.; Colin, S.; Gasol, J.; Dorrell, R.; Henry, N.; Scalco, E. et al.; Acinas, S.; Wincker, P.; de Vargas, C.; Bowler, S.: A robust approach to estimate relative phytoplankton cell abundances from metagenomes. Molecular Ecology Resources 23 (1), pp. 16 - 40 (2023)

Schönecker, S.; Hoffmann, V.; Albashiti, F.; Thasler, R.; Hagedorn, M.; Louiset, M.-L.; Kopczak, A.; Rösler, J.; Baki, E.; Wunderlich, S. et al.; Kohlmayer, F.; Kuhn, K.; Boeker, M.; Tünnerhoff, J.; Poli, S.; Ziemann, U.; Kohlbacher, O.; Althaus, K.; Müller, S.; Ludolph, A.; Kestler, H.; Mansmann, U.; Dieterich, M.; Kellert, L.: PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults - a study protocol. BMC Neurology 23 (1), 2 (2023)

Schüssele, D.; Haller, P.; Haas, M.; Hunter, C.; Sporbeck, K.; Proikas-Cezanne, T.: Autophagy profiling in single cells with open source CellProfiler-based image analysis. Autophagy 19 (1), pp. 338 - 351 (2023)

Krasavin, M.; Bubyrev, A.; Kazantsev, A.; Heim, C.; Maiwald, S.; Zhukovsky, D.; Dar'in, D.; Hartmann, M.; Brunev, A.: Replacing the phthalimide core in thalidomide with benzotriazole. Journal of Enzyme Inhibition and Medicinal Chemistry 37 (1), pp. 527 - 530 (2022)

Lundberg, D.; de Pedro Jové, R.; Na Ayutthaya, P.; Karasov, T.; Shalev, O.; Poersch, K.; Ding, W.; Bollmann-Giolai , A.; Bezrukov, I.; Weigel, D.: Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere. Proceedings of the National Academy of Sciences of the United States of America 119 (52), e2211881119 (2022)

Ruaud, A.; Pfister, N.; Ley, R.; Youngblut, N.: Interpreting tree ensemble machine learning models with endoR. PLoS Computational Biology 18 (12), e1010714 (2022)

Schulze, S.; Yu, L.; Hua, C.; Zhang, L.; Kolb, D.; Weber, H.; Ehinger, A.; Saile, S.; Stahl, M.; Franz-Wachtel, M. et al.; Lei, L.; El Kasmi, F.; Nürnberger, T.; Cevik, V.; Kemmerling, B.: The Arabidopsis TIR-NBS-LRR protein CSA1 guards BAK1-BIR3 homeostasis and mediates convergence of pattern- and effector-induced immune responses. Cell Host & Microbe 30 (12), pp. 1717 - 1731 (2022)