Publications in Yearbook 2017


Journal Article

Fenouil, R.; Descostes, N.; Spinelli, .; Koch, F.; Maqbool, M. A.; Benoukraf, T.; Cauchy, P.; Innocenti , C.; Ferrier , P.; Andrau, J.-C.: Pasha: a versatile R package for piling chromatin HTS data. Bioinformatics 32 (16), pp. 2528 - 2530 (2016)
Hackmann, K.; Rump, A.; Haas, S.; Lemke, J. R.; Fryns, J.-P.; Tzschach, A.; Wieczorek, D.; Albrecht, B.; Kuechler, A.; Rippberger, T. et al.; Kobelt, A.; Oexle, K.; Tinschert, S.; Schrock, E.; Kalscheuer, V. M.; Di Donato, N.: Tentative clinical diagnosis of Lujan-Fryns syndrome--A conglomeration of different genetic entities? American Journal of Medical Genetics Part A 170A (1), pp. 94 - 102 (2016)
Aguilar, C. A.; Pop, R.; Shcherbina, A.; Watts, A.; Matheny Jr., R. W.; Cacchiarelli, D.; Han, W. M.; Shin, E.; Nakhai, S. A.; Jang, Y. C. et al.; Carrigan, C. T.; Gifford, C. A.; Kottke, M. A.; Cesana, M.; Lee, J.; Urso, M. L.; Meissner, A.: Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma. Stem Cell Reports 7 (5), pp. 983 - 997 (2016)
Alam, M. T.; Zelezniak, A.; Mülleder, M.; Shliaha, P.; Schwarz, R.; Capuano, F.; Vowinckel, J.; Radmanesfahar , E.; Krüger, A.; Calvani , E. et al.; Michel, S.; Börno, S. T.; Christen, S.; Patil , K. R.; Timmermann, B.; Lilley, K. S.; Ralser, M.: The metabolic background is a global player in Saccharomyces gene expression epistasis. Nature Microbiology (2016)
Ancherbak, S.; Kuruoglu, E. E.; Vingron, M.: Time-Dependent Gene Network Modelling by Sequential Monte Carlo. IEEE ACM Transactions on Computational Biology and Bioinformatics 13 (6), pp. 1183 - 1193 (2016)
Andrey, G.; Schöpflin, R.; Jerković, I.; Heinrich, V.; Ibrahim, D.; Paliou, C.; Hochradel, M.; Timmermann, B.; Haas, S.; Vingron, M. et al.; Mundlos, S.: Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding. Genome Research 27 (2), pp. 223 - 233 (2017)
Apelt, L.; Knockenhauer, K. E.; Leksa, N. C.; Benlasfer, N.; Schwartz, T. U.; Stelzl, U.: Systematic Protein-Protein Interaction Analysis Reveals Intersubcomplex Contacts in the Nuclear Pore Complex. Molecular and Cellular Proteomics 15 (8), pp. 2594 - 2606 (2016)
Aretz, I.; Meierhofer, D.: Advantages and Pitfalls of Mass Spectrometry Based Metabolome Profiling in Systems Biology. International Journal of Molecular Sciences (2016)
Aretz, I.; Hardt, C.; Wittig, I.; Meierhofer, D.: An impaired respiratory electron chain triggers down-regulation of the energy metabolism and de-ubiquitination of solute carrier amino acid transporters. Molecular and Cellular Proteomics 15 (5), pp. 1526 - 1538 (2016)
Batalha, V.; Ferreira, D. G.; Coelho, J. E.; Valadas, J. S.; Gomes, R.; Temido-Ferreira, M.; Shmidt, T.; Baqi, Y.; Buée, L.; Müller, C. E. et al.; Hamdane, M.; Outeiro, T. F.; Bader, M.; Meijsing, S.; Sadri-Vakili, G.; Blum, D.; Lopes, L. V.: The caffeine-binding adenosine A2A receptor induces age-like HPA-axis dysfunction by targeting glucocorticoid receptor function. Scientific Reports (2016)
Broecker, F.; Hardt, C.; Herwig, R.; Timmermann, B.; Kerick, M.; Wunderlich, A.; Schweiger, M. R.; Borsig, L.; Heikenwalder, M.; Lehrach, H. et al.; Moelling, K.: Transcriptional signature induced by a metastasis-promoting c-Src mutant in a human breast cell line. The FEBS Journal 283 (9), pp. 1669 - 1688 (2016)
Castelo-Branco, P.; Leão, R.; Lipman, T.; Campbell, B.; Lee, D.; Price, A.; Zhang, C.; Heidari, A.; Stephens, D.; Boerno, S. T. et al.; Coelho, H.; Gomes, A.; Domingos, C.; Apolonio, J. D.; Schäfer, G.; Bristow, R. G.; Schweiger, M. R.; Hamilton, R.; Zlotta, A.; Figueiredo, A.; Helmut, K.; Sültmann, H.; Tabori, U.: A cancer specific hypermethylation signature of the TERT promoter predicts biochemical relapse in prostate cancer: A retrospective cohort study. Oncotarget (2016)
Chung, H.-R.; Xu, C.; Fuchs, A.; Mund, A.; Lange, M.; Staege, H.; Schubert, T.; Bian, C.; Dunkel, I.; Eberharter, A. et al.; Regnard, C.; Klinker, H.; Meierhofer, D.; Cozzuto, L.; Winterpracht, A.; Di Croce, L.; Min, J.; Will, H.; Kinkley, S.: PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3. eLife (2016)
Conrad, T.; Albrecht, A.-S.; Rodrigues de Melo Costa, V.; Sauer, S.; Meierhofer, D.; Ørom, U. A.: Serial interactome capture of the human cell nucleus. Nature Communications (2016)
Cui, H.; Schlesinger, J.; Schoenhals, S.; Tönjes, M.; Dunkel, I.; Meierhofer, D.; Cano, E.; Schulz, K.; Berger, M. F.; Haack, T. et al.; Abdelilah-Seyfried, S.; Bulyk, M. L.; Sauer, S.; Sperling, S. R.: Phosphorylation of the chromatin remodeling factor DPF3a induces cardiac hypertrophy through releasing HEY repressors from DNA. Nucleic Acids Research (London) 46 (6), pp. 2538 - 2553 (2016)
Du Bois, I.; Marsico, A.; Bertrams, W.; Schweiger, M. R.; Caffrey, B.; Sittka-Stark, A.; Eberhardt, M.; Vera, J.; Vingron, M.; Schmeck, B. T.: Genome-wide Chromatin Profiling of Legionella pneumophila-Infected Human Macrophages Reveals Activation of the Probacterial Host Factor TNFAIP2. The Journal of Infectious Diseases 214 (3), pp. 454 - 463 (2016)
Franke, M.; Ibrahim, D.; Andrey, G.; Schwarzer, W.; Heinrich, V.; Schöpflin, R.; Kraft, K.; Kempfer, R.; Jerković, I.; Chan, W.-L. et al.; Spielmann, M.; Timmermann, B.; Wittler, L.; Kurth, I.; Cambiaso, P.; Zuffardi, O.; Houge, G.; Lambie, L.; Brancati, F.; Pombo, A.; Vingron, M.; Spitz, F.; Mundlos, S.: Formation of novel chromatin domains determines pathogenicity of genomic duplications. Nature 538 (7624), pp. 265 - 269 (2016)
The Berlin Aging Study II: An overview [Special section]. Gerontology 62 (3), pp. 311 - 362 (2016)
Hackmann, K.; Rump, A.; Haas, S. A.; Lemke, J. R.; Fryns, J. P.; Tzschach, A.; Wieczorek, D.; Albrecht, B.; Kuechler, A.; Ripperger, T. et al.; Kobelt, A.; Oexle, K.; Tinschert, S.; Schrock, E.; Kalscheuer, V. M.; Di Donato, N.: Tentative clinical diagnosis of Lujan-Fryns syndrome-A conglomeration of different genetic entities? American Journal of Medical Genetics Part A 170 (1), pp. 94 - 102 (2016)
Hardt, C.; Beber, M. E.; Rasche, A.; Kamburov, A.; Hebels, D. G.; Kleinjans, J. C.; Herwig, R.: ToxDB: pathway-level interpretation of drug-treatment data. Database (Oxford) (2016)
Go to Editor View