Scientific Publications

Beggel, B.; Neumann-Fraune, M.; Kaiser, R.; Verheyen, J.; Lengauer, T.: Inferring Short-Range Linkage Information from Sequencing Chromatograms. PLoS One 8 (12), e81687, pp. 1 - 8 (2013)

Claude, F.; Nicholson, P. K.; Seco, D.: On the Compression of Search Trees. Information Processing & Management 50 (2), pp. 272 - 283 (2013)

Gawrychowski, P.; Jeż, A.; Jeż, Ł.: Validating the Knuth-Morris-Pratt Failure Function, Fast and Online. Theory of Computing Systems 54 (2), pp. 337 - 372 (2013)

Oette, M.; Reuter, S.; Kaier, R.; Jensen, B.; Lengauer, T.; Fatkenheuer, G.; Knechten, H.; Hower, M.; Sagir, A.; Pfister, H. et al.; Haussinger, D.: Ambulatory Care for HIV-infected Patients: Differences in Outcomes between Hospital-based Units and Private Practices: Analysis of the RESINA Cohort. European Journal of Medical Research 18, 48 (2013)

Kalinina, O. V.; Pfeifer, N.; Lengauer, T.: Modelling Binding Between CCR5 and CXCR4 Receptors and Their Ligands Suggests the Surface Electrostatic Potential of the Co-receptor to Be a Key Player in the HIV-1 Tropism. Retrovirology 10, 130, pp. 130:1 - 130:11 (2013)

Zanon, A.; Rakovic, A.; Blankenburg, H.; Doncheva, N. T.; Schwienbacher, C.; Serafin, A.; Alexa, A.; Weichenberger, C. X.; Albrecht, M.; Klein, C. et al.; Hicks, A. A.; Pramstaller, P. P.; Domingues, F. S.; Pichler, I.: Profiling of Parkin-binding Partners Using Tandem Affinity Purification. PLoS One 8 (11), e78648, pp. 1 - 17 (2013)

Sandoval, J.; Mendez-Gonzales, J.; Nadal, E.; Chen, G.; Carmona, F. J.; Sayols, S.; Moran, S.; Heyn, H.; Vizoso, M.; Gomez, A. et al.; Sanchez-Cespedes, M.; Assenov, Y.; Müller, F.; Bock, C.; Taron, M.; Mora, J.; Muscarella, L. A.; Liloglou, T.; Davies, M.; Pollan, M.; Pajares, M. J.; Torre, W.; Montuenga, L. M.; Brambilla, E.; Field, J. K.; Roz, L.; Lo Iacono, M.; Scagliotti, G. V.; Rosell, R.; Beer, D. G.; Esteller, M.: A Prognostic DNA Methylation Signature for Stage I Non-Small-Cell Lung Cancer. Journal of Clinical Oncology 31 (32), pp. 4140 - 4147 (2013)

Santos, A. R.; Pereira, V. B.; Barbosa, E.; Baumbach, J.; Pauling, J.; Röttger, R.; Turk, M. Z.; Silva, A.; Miyoshi, A.; Azevedo, V.: Mature Epitope Density - A Strategy for Target Selection Based on Immunoinformatics and Exported Prokaryotic Proteins. BMC Genomics 14 (Suppl 6), S4 (2013)

Schelhorn, S. E.; Fischer, M.; Tolosi, L.; Altmüller, J.; Nürnberg, P.; Pfister, H.; Lengauer, T.; Berthold, F.: Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes. PLoS Computational Biology 9 (10), e1003228, pp. 1 - 17 (2013)

Michels, K. B.; Binder, A. M.; Dedeurwaerder, S.; Epstein, C. B.; Greally, J. M.; Gut, I.; Houseman, E. A.; Bock, C.; Irizarry, R. A.: Recommendations for the Design and Analysis of Epigenome-wide Association Studies. Nature Methods 10, pp. 949 - 955 (2013)

Schulz, M. H.; Pandit, K. V.; Lino Cardenas, C. L.; Ambalavanan, N.; Kaminski, N.; Bar-Joseph, Z.: Reconstructing Dynamic MicroRNA-regulated Interaction Networks. Proceedings of the National Academy of Sciences of the United States of America 110 (39), pp. 15686 - 15691 (2013)

Kozma , L.; Moran, S.: Shattering, Graph Orientations and Connectivity. The Electronic Journal of Combinatorics 20 (3), P44 (2013)

Pou, C.; Codoner, f. M.; Thielen, A.; Bellido, R.; Perez-Alvarez, S.; Cabrera, C.; Dalmau, J.; Curriu, M.; Lie, Y.; Noguera-Julian, M. et al.; Puig, J.; Martinez-Picadao, J.; Blanco, J.; Daumer, M.; Clotet, B.; Paredes, R.: HIV-1 Tropism Testing in Subjects Achieving Undetectable HIV-1 RNA: Diagnostic Accuracy, Viral Evolution and Compartmentalization. PLoS One 8 (8), e67085 (2013)

Zakharkina, T.; Heinzel, E.; Koczulla, R. A.; Greulich, T.; Rentz, K.; Pauling, J.; Baumbach, J.; Herrmann, M.; Grunewald, C.; Dienemann, H. et al.; von Müller, L.; Bals, R.: Analysis of the Airway Microbiota of Healthy Individuals and Patients with Chronic Obstructive Pulmonary Disease by T-RFLP and Clone Sequencing. PLoS One 8 (7), e68302 (2013)

Schatz, M. C.; Taylor, J.; Schelhorn, S. E.: The DNA60IFX Contest. Genome Biology 14 (6), 124, pp. 124:1 - 124:4 (2013)

Bhadra, T.; Battacharya, M.; Feuerbach, L.; Lengauer, T.; Bandyopadhyay, S.: DNA Methylation Patterns Facilitate the Identification of MicroRNA Transcription Start Sites: A Brain-specific Study. PLoS One 8 (6), e66722 (2013)

Rizkallah, C.: An Axiomatic Characterization of the Single-source Shortest Path Problem. Archive of Formal Proofs (2013)

Neumann-Fraune, M.; Beggel, B.; Pfister, H.; Kaiser, R.; Verhyen, J.: High frequency of complex mutational patterns in lamivudine resistant hepatitis B virus isolates. Journal of Medical Virology 85 (5), pp. 775 - 779 (2013)

Hauschild, A.-C.; Kopczynski, D.; D'Addario, M.; Baumbach, J. I.; Rahmann, S.; Baumbach, J.: Peak Detection Method Evaluation for Ion Mobility Spectrometry by using Machine Learning Approaches. Metabolites 3 (2), pp. 277 - 293 (2013)

Schneider, T.; Hauschild, A.-C.; Baumbach, J. I.; Baumbach, J.: An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air. Journal of Integrative Bioinformatics 10 (2), 218 (2013)