Journal Article (3029)

41.
Journal Article
Christou-Kent, M.; Cuartero, S.; Garcia-Cabau, C.; Ruehle, J.; Naderi, J.; Erber, J.; Neguembor, M. V.; Plana-Carmona, M.; Alcoverro-Bertran, M.; De Andres-Aguayo, L. et al.; Klonizakis, A.; Julià-Vilella, E.; Lynch, C.; Serrano, M.; Hnisz, D.; Salvatella, X.; Graf, T.; Stik, G.: CEBPA phase separation links transcriptional activity and 3D chromatin hubs. Cell Reports 42 (8), 112897 (2023)
42.
Journal Article
Garcia-Ojalvo, J.; Bulut-Karslioglu, A.: On time: developmental timing within and across species. Development 150 (14), dev201045 (2023)
43.
Journal Article
Maji, R. K.; Czepukojc, B.; Scherer, M.; Tierling, S.; Cadenas, C.; Gianmoena, K.; Gasparoni, N.; Nordström, K.; Gasparoni, G.; Laggai, S. et al.; Yang, X.; Sinha, A.; Ebert, P.; Falk-Paulsen, M.; Kinkley, S.; Hoppstädter, J.; Chung, H.-R.; Rosenstiel, P.; Hengstler, J. G.; Walter, J.; Schulz, M. H.; Kessler, S. M.; Kiemer, A. K.: Alterations in the Hepatocyte Epigenetic Landscape in Steatosis. Epigenetics & Chromatin 16, 30 (2023)
44.
Journal Article
Sampath Kumar, A.; Tian, L.; Bolondi, A.; Aragonés Hernández, A.; Stickels, R.; Kretzmer, H.; Murray, E.; Wittler, L.; Walther, M.; Barakat, G. et al.; Haut, L.; Elkabetz, Y.; Macosko, E. Z.; Guignard, L.; Chen, F.; Meissner, A.: Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis. Nature Genetics 55 (7), pp. 1176 - 1185 (2023)
45.
Journal Article
Allou, L.; Mundlos, S.: Disruption of regulatory domains and novel transcripts as disease-causing mechanisms. BioEssays 45, 2300010 (2023)
46.
Journal Article
Guo, H.; Vuille, J. A.; Wittner, B. S.; Lachtara, E. M.; Hou, Y.; Lin, M.; Zhao, T.; Raman, A. T.; Russell, H. C.; Reeves, B. A. et al.; Pleskow, H. M.; Wu, C.-L.; Gnirke, A.; Meissner, A.; Efstathiou, J. A.; Lee, R. J.; Toner, M.; Aryee, M. J.; Lawrence, M. S.; Miyamoto, D. T.; Maheswaran, S.; Haber, D. A.: DNA hypomethylation silences anti-tumor immune genes in early prostate cancer and CTCs. Cell 186 (13), pp. 2765 - 2782 (2023)
47.
Journal Article
Gorriz, R. F.; Volkenandt, S.; Imhof, P.: Protonation-State Dependence of Hydration and Interactions in the Two Proton-Conducting Channels of Cytochrome c Oxidase. International Journal of Molecular Sciences 24 (13), 10464 (2023)
48.
Journal Article
Khaveh, N.; Schachler, K.; Berghöfer, J.; Jung, K.; Metzger, J.: Altered hair root gene expression profiles highlight calcium signaling and lipid metabolism pathways to be associated with curly hair initiation and maintenance in Mangalitza pigs. Frontiers in Genetics 14, 1184015 (2023)
49.
Journal Article
Noviello, G.; Gjaltema, R. A. F.; Schulz, E. G.: CasTuner is a degron and CRISPR/Cas-based toolkit for analog tuning of endogenous gene expression. Nature Communications 14 (1), 3225 (2023)
50.
Journal Article
Lienhard, M.; van den Beucken , T.; Timmermann, B.; Hochradel, M.; Boerno, S.; Caiment , F.; Vingron, M.; Herwig, R.: IsoTools: a flexible workflow for long-read transcriptome sequencing analysis. Bioinformatics 39 (6), btad364 (2023)
51.
Journal Article
Mehringer, S.; Seiler, E.; Droop, F.; Mitra, D.; Rahn, R.; Vingron, M.; Reinert, K.: Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries. Genome Biology: Biology for the Post-Genomic Era 24 (1), 131 (2023)
52.
Journal Article
Dejosez, M.; Dall’Agnese, A.; Ramamoorthy, M.; Platt, J.; Yin, X.; Hogan, M.; Brosh, R.; Weintraub, A. S.; Hnisz, D.; Abraham, B. J. et al.; Young, R. A.; Zwaka, T. P.: Regulatory architecture of housekeeping genes is driven by promoter assemblies. Cell Reports 42 (5), 112505 (2023)
53.
Journal Article
Preußner, M.; Smith, H. L.; Hughes, D.; Zhang, M.; Emmerichs, A.-K.; Scalzitti, S.; Peretti, D.; Swinden , D.; Neumann, A.; Haltenhof, T. et al.; Mallucci, G. R.; Heyd, F.: ASO targeting RBM3 temperature‐controlled poison exon splicing prevents neurodegeneration in vivo. Embo Molecular Medicine 15 (5), e17157 (2023)
54.
Journal Article
Krämer, A.; Durumeric, A. E. P.; Charron, N. E.; Chen, Y.; Clementi , C.; Noé , F.: Statistically Optimal Force Aggregation for Coarse-Graining Molecular Dynamics. The Journal of Physical Chemistry Letters 14 (17), pp. 3970 - 3979 (2023)
55.
Journal Article
De Maio, N.; Kalaghatgi, P.; Turakhia, Y.; Corbett-Detig, R.; Quang Minh, B.; Goldman, N.: Maximum likelihood pandemic-scale phylogenetics. Nature Genetics 55, pp. 746 - 752 (2023)
56.
Journal Article
Kusová, A.; Steinbachová, L.; Přerovská, T.; Záveská Drábková, L.; Paleček, J.; Khan, A.; Rigóová, G.; Gadiou, Z.; Jourdain, C.; Stricker, T. et al.; Schubert, D.; Honys, D.; Procházková Schrumpfová, P.: Completing the TRB family: newly characterized members show ancient evolutionary origins and distinct localization, yet similar interactions. Plant Molecular Biology 112 (1-2), pp. 61 - 83 (2023)
57.
Journal Article
Bouabid, C.; Rabhi, S.; Thedinga, K.; Barel, G.; Tnani, H.; Rabhi , I.; Benkahla, A.; Herwig, R.; Guizani-Tabbane, L.: Host M-CSF induced gene expression drives changes in susceptible and resistant mice-derived BMdMs upon Leishmania major infection. Frontiers in immunology 14, 1111072 (2023)
58.
Journal Article
Messner, C. B.; Demichev, V.; Muenzner, J.; Aulakh, S. K.; Barthel, N.; Röhl, A.; Herrera-Domínguez, L.; Egger, A.-S.; Kamrad, S.; Hou, J. et al.; Tan, G.; Lemke, O.; Calvani, E.; Szyrwiel, L.; Mülleder, M.; Lilley, K. S.; Boone, C.; Kustatscher, G.; Ralser, M.: The proteomic landscape of genome-wide genetic perturbations. Cell 186 (9), pp. 2018 - 2034 (2023)
59.
Journal Article
Tsaytler, P.; Liu, J.; Blaess, G.; Schifferl, D.; Veenvliet, J. V.; Wittler, L.; Timmermann, B.; Herrmann, B. G.; Koch, F.: BMP4 triggers regulatory circuits specifying the cardiac mesoderm lineage. Development, dev.201450 (2023)
60.
Journal Article
Stellmach, C.; Sass, J.; Auber, B.; Boeker, M.; Wienker, T. F.; Heidel, A. J.; Benary, M.; Schumacher, S.; Ossowski, S.; Klauschen, F. et al.; Möller , Y.; Schmutzler, R.; Ustjanzew, A.; Werner, P.; Tomczak, A.; Hölter, T.; Thun, S.: Creation of a structured molecular genomics report for Germany as a local adaption of HL7's Genomic Reporting Implementation Guide. Journal of the American Medical Informatics Association, ocad061 (2023)
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