Publications 2019

Journal Article

  1. Saçma, M.; Pospiech, J.; Bogeska, R.; de Back, W.; Mallm, J.-P.; Sakk, V.; Soller, K.; Marka, G.; Vollmer, A.; Karns, R. et al.; Cabezas-Wallscheid, N.; Trumpp, A.; Méndez-Ferrer, S.; Milsom, M. D.; Mulaw, M. A.; &, H. G.; Florian, M. C.: Haematopoietic stem cells in perisinusoidal niches are protected from ageing. Nature Cell Biology 21, pp. 1309 - 1320 (2019)
  2. Karoutas, A.; Szymanski, W.; Rausch, T.; Guhathakurta, S.; Rog-Zielinska, E. A.; Peyronnet, R.; Seyfferth, J.; Chen, H.-R.; de Leeuw, R.; Herquel, B. et al.; Kimura, H.; Mittler, G.; Kohl, P.; Medalia, O.; Korbel, J. O.; Akhtar, A.: The NSL complex maintains nuclear architecture stability via lamin A/C acetylation. Nature Cell Biology 21, pp. 1248 - 1260 (2019)
  3. Aizarani, N.; Saviano, A.; Sagar, S.; Mailly , L.; Durand, S.; Herman, J. S.; Pessaux, P.; Baumert , T. F.; Grün, D.: A human liver cell atlas reveals heterogeneity and epithelial progenitors. Nature 572, pp. 199 - 204 (2019)
  4. Cameron, A. M.; Castoldi, A.; Sanin, D. E.; Flachsmann, L. J.; Field, C. S.; Puleston, D. J.; Kyle, R. L.; Patterson, A.; Hassler, F.; Buescher, J. M. et al.; Kelly, B.; Pearce, E. L.; Pearce, E. J.: Inflammatory macrophage dependence on NAD+ salvage is a consequence of reactive oxygen species-mediated DNA damage. Nature Immunology 20, pp. 420 - 432 (2019)
  5. Lam, K.-C.; Chung, H.-R.; Semplicio, G.; Iyer, S. S.; Gaub, A.; Bhardwaj, V.; Holz, H.; Georgiev, P.; Akhtar, A.: The NSL complex-mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise. Genes and Development 33, pp. 453 - 465 (2019)
  6. Aprile-Garcia, F.; Parul, T.; Hummel, B.; Khavaran, A.; Sawarkar, R.: Nascent-protein ubiquitination is required for heat shock-induced gene downregulation in human cells. Nature Structural and Molecular Biology, pp. 137 - 146 (2019)
  7. Masuda, T.; Sankowski, R.; Staszewski, O.; Böttcher, C.; Amann, L.; Sagar, S.; Scheiwe, C.; Nessler, S.; Kunz, P.; van Loo, G. et al.; Coenen, V. A.; Reinacher, P. C.; Michel, A.; Sure, U.; Gold, R.; Grün, D.; Priller, J.; Stadelmann, C.; Prinz, M.: Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution. Nature 566, pp. 388 - 392 (2019)
  8. Jordão, M. J. C.; Sankowski, R.; Brendecke, S. M.; Sagar, S.; Locatelli, G.; Tai, Y.-H.; Tay, T. L.; Schramm, E.; Armbruster, S.; Hagemeyer, N. et al.; Groß, O.; Mai, D.; Çiçek, Ö.; Falk, T.; Kerschensteiner, M.; Grün, D.; Prinz, M.: Single-cell profiling identifies myeloid cell subsets with distinct fates during neuro inflammation. Science 363 (2019)
  9. Nicetto, D.; Donahue, G.; Jain, T.; Peng, T.; Sidoli, S.; Sheng, L.; Montavon, T.; Becker, J. S.; Grindheim, J. M.; Blahnik, K. et al.; Garcia, B. A.; Tan, K.; Bonasio, R.; Jenuwein, T.; Zaret, K. S.: H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification. Science 363, pp. 294 - 297 (2019)
  10. Assi, S. A.; Imperato, M. R.; Coleman, D. J. L.; Pickin, A.; Potluri, S.; Ptasinska, A.; Chin, P. S.; Blair, H.; Cauchy, P.; James, S. R. et al.; Zacarias-Cabeza, J.; Gilding, L. N.; Beggs, A.; Clokie, S.; Loke, J. C.; Jenkin, P.; Uddin, A.; Delwel, R.; Richards, S. J.; Raghavan, M.; Griffiths, M. J.; Heidenreich, O.; Cockerill, P. N.; Bonifer, C.: Subtype-specific regulatory network rewiring in acute myeloid leukemia. Nature Genetics 51, pp. 151 - 162 (2019)
  11. Avilov, S.; Aleksandrova, N.: Fluorescence protein complementation in microscopy: applications beyone detacting bi-molecular interactions. Methods in Applied Fluorescence 7, p. 012001 (2019)
  12. Breucker , J.; Pichler, A.: Analysis of Sumoylation. Methods in Molecular Biology 1934, pp. 223 - 233 (2019)
  13. Cauchy, P.; Kahn-Perlès, B.; Ferrier, P.; Imbert, J.; Lécine, P.: 2HybridTools, a handy software to facilitate clone identification and mutation mapping from yeast two-hybrid screening. PeerJ 7, p. 7245 (2019)
  14. Eisenhardt, N.; Ilic, D.; Nagamalleswari, E.; Pichler, A.: Biochemical characterization of SUMO-conjugating enzymes by in vitro sumoylation assays. Methods in Enzymology 618, pp. 167 - 185 (2019)
  15. Kolter, J.; Feuerstein, R.; Zeis, P.; Hagemeyer, N.; Paterson, N.; d’Errico, P.; Baasch, S.; Amann, L.; Masuda, T.; Lösslein, A. et al.; Gharun, K.; Meyer-Luehmann, M.; Waskow, C.; Franzke, C.-W.; Grün, D.; Lämmermann, T.; Prinz, M.; Henneke, P.: A Subset of Skin Macrophages Contributes to the Seruveillance and Regeneration of Local Nerves. Immunity 50, pp. 1482 - 1497 (2019)
  16. Panhale, A.; Richter , F. M.; Ramírez, F.; Shvedunova, M.; Manke, T.; Mittler, G.; Akhtar, A.: CAPRI enables comparison of evolutionary conserved RNA interacting regions. Nature Communications 10, p. 2682 (2019)
  17. Puleston, D. J.; Buck, M. D.; Geltink, R. I. K.; Kyle, R. L.; Caputa, G.; O’Sullivan, D.; Cameron, A. M.; Castoldi, A.; Musa, Y.; Kabat, A. M. et al.; Zhang, Y.; Flachsmann, L. J.; Field, C. S.; Patterson, A. E.; Scherer, S.; Alfei, F.; Baixauli, F.; Austin, S. K.; Kelly, B.; Matsushita, M.; Curtis, J. D.; Grzes, K. M.; Villa, M.; Corrado, M.; Sanin, D. E.; Qiu, J.; Pällman, N.; Paz, K.; Maccari, M. E.; Blazar, B. R.; Mittler, G.; Büscher, J.; Zehn, D.; Rospert, S.; Pearce, E. J.; Balabanov, S.; Pearce, E. L.: Polyamines and eIF5A Hypusination Modulate Mitochondrial Respiration and Macrophage Activation. Cell Metabolism 30, pp. 1 - 12 (2019)
  18. Ramisch, A.; Heinrich, V.; Glaser, L. V.; Fuchs, A.; Yang, X.; Benner, P.; Schöpflin, R.; Li, N.; Kinkley, S.; Römer-Hillmann, A. et al.; Longinotto, J.; Heyne, S.; Czepukojc, B.; Kessler, S. M.; Kiemer, A. K.; Cadenas, C.; Arrigoni, L.; Gasparoni, N.; Manke, T.; Pap, T.; Pospisilik, A.; Hengstler, J.; Walter, J.; Meijsing, S. H.; Chung, H.-R.; Vingron, M.: CRUP: a comprehensive framework to predict condition-specific regulatory units. Genome Biology: Biology for the Post-Genomic Era 20, p. 227 (2019)
  19. Volpe, G.; Cauchy, P.; Walton, D. S.; Ward, C.; Blakemore, D.; Bayley, R.; Clarke, M. L.; Schmidt, L.; Nerlov, C.; Garcia, P. et al.; Dumon, S.; Grebien, F.: Dependence on Myb expression is attenuated in myeloid leukaemia with N-terminal CEBPA mutations. Life Science Alliance 2, p. e201800207 (2019)

Book Chapter

  1. Sagar, S.; Grün, D.: Lineage Inference and Stem Cell Identity prediction Using Single-Cell RNA-Sequencing Data. In: Methods in Molecular Biology, pp. 227 - 301. Humana Press, Clifton, N.J. (2019)
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