July 14, 2011
Cell walls are referred to as primary or secondary according to their materials and characteristics. While the cell is still growing it is only surrounded by the elastic and flexible primary cell wall. When the cell is fully grown, certain types of cells, for example the water transporting vessels, form a rigid secondary cell wall. The most important component of both cell wall types is cellulose – a long chain-shaped molecule which consists of several thousand monosaccharides that assemble themselves to form extremely tear-resistant bundles known as microfibrils. These cellulose microfibrils surround the plant cell like steel cables and give it shape and stability. Although cellulose cannot be digested by humans and animals, and is, therefore, of no nutritional value, it is an important industrial raw material. It is used, for example, in the paper industry, in construction and as a precursor for fuel.
Cellulose synthesis takes place in the cell membrane. The enzyme complex responsible for cellulose synthesis consists of three different CesA (cellulose synthase) proteins which supposedly link the individual sugar molecules with each other and channel them out of the cell. The CesA proteins, which are involved in the synthesis of both primary and secondary cell walls, are related to each other but also differ in certain aspects. In addition to the CesAs, many other enzymes are believed to be associated with the synthesis or export of cellulose. Up to now, the research on cellulose synthesis focused, in particular, on Arabidopsis, the model organism favoured by biologists. Due to its short lifecycle and biological simplicity, Arabidopsis is extremely useful for research, but lacks economic potential. Persson and his colleagues would therefore like to apply the knowledge gained from the research on this plant to other more economically important plant species.
The aim of their research is to identify genes in important crops, such as barley, rice and wheat, and in poplar and soya beans that have the same function as already well-characterised genes found in Arabidopsis. With the help of a technique called co-expression analysis, they investigated which gene families become active at the same time and in the same place as the CesA genes and therefore are probably also involved in cellulose synthesis. “Genes that are expressed in cells at the same time probably also work in the same process,” says Persson, explaining the approach adopted by his research group. In addition, this method also enables the scientists to weed out any false-positives, as genes that can only be connected with the CesA genes in Arabidopsis and not in any other species are presumably not as essential for cellulose synthesis as was previously believed.
The glycosyltransferases are a super-family of genes that can be found in almost all co-expression networks. These are enzymes that transfer activated sugar groups to existing sugar polymers, proteins or lipids. The precise function of these enzymes in relation to cellulose is not yet known; however, their presence in a wide variety of species would suggest that they play an important role in this process. Genes that code for components of the cell cytoskeleton were more strongly associated with the primary-wall-specific CesA genes, and this would indicate that the cell cytoskeleton plays a more important role in the synthesis of the primary cell wall. The researchers were intrigued to discover that many signalling-related genes and protein degradation genes were also persistently co-expressed with the CesA genes.
“Our method enables the systematic analysis of entire genomes of different crops, with the aim to discover functional relationships between gene families,” says Persson. Co-expression analysis is therefore a very promising tool that will enable the application of knowledge that was previously limited to Arabidopsis to other agriculturally significant plants.